# ========= [INFO] ==========
# Mut inCB: not accepter mutation in BC
# Mut inMS: 2
# ReadIn  : /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1003_AC15A25/Q20_P3_bc1003_AC15A25.bam.seq
# seq_deb : GACTTAGTC
# seq_fin : TCTCT
# MS_seq : A
# excl : C,G,T
# nom  : A25
# log  : /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1003_AC15A25/Q20_P3_bc1003_AC15A25.bam.A25.seq.log
# =============================
#
# condiGrep: GACT.AGTC.+.CTCT|GACT.AGTC.+T.TCT|GACT.AGTC.+TC.CT|GACT.AGTC.+TCT.T|GACT.AGTC.+TCTC.|GACTT.GTC.+.CTCT|GACTT.GTC.+T.TCT|GACTT.GTC.+TC.CT|GACTT.GTC.+TCT.T|GACTT.GTC.+TCTC.|GACTTA.TC.+.CTCT|GACTTA.TC.+T.TCT|GACTTA.TC.+TC.CT|GACTTA.TC.+TCT.T|GACTTA.TC.+TCTC.|GACTTAG.C.+.CTCT|GACTTAG.C.+T.TCT|GACTTAG.C.+TC.CT|GACTTAG.C.+TCT.T|GACTTAG.C.+TCTC.|GACTTAGT..+.CTCT|GACTTAGT..+T.TCT|GACTTAGT..+TC.CT|GACTTAGT..+TCT.T|GACTTAGT..+TCTC.
# condiSet1: s/^.*GACT.AGTC//g;s/^.*GACTT.GTC//g;s/^.*GACTTA.TC//g;s/^.*GACTTAG.C//g;s/^.*GACTTAGT.//g
# condiSet2: s/.CTCT.*$//g;s/T.TCT.*$//g;s/TC.CT.*$//g;s/TCT.T.*$//g;s/TCTC..*$//g
# Pre-filtre ExactEnd: 93477 /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1003_AC15A25/Q20_P3_bc1003_AC15A25.bam.A25.seq.exactEachEnd.MS
# Pre-filtre MutInEnd: 213 /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1003_AC15A25/Q20_P3_bc1003_AC15A25.bam.A25.seq.Max1MutEachEnd.MS
# [Creat: /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1003_AC15A25/Q20_P3_bc1003_AC15A25.bam.A25.seq.MS.all ] 93510 lines.
#
#> SophieMS_GenotyperMS_unProfil.r /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1003_AC15A25/Q20_P3_bc1003_AC15A25.bam.A25.seq.MS.all.nb A
#> SophieMS_GenotyperMS_unProfil_v2.r /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1003_AC15A25/Q20_P3_bc1003_AC15A25.bam.A25.seq.exactEachEnd.MS.MS_noMut.nb /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1003_AC15A25/Q20_P3_bc1003_AC15A25.bam.A25.seq.exactEachEnd.MS.MS_Mut.nb /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1003_AC15A25/Q20_P3_bc1003_AC15A25.bam.A25.seq.Max1MutEachEnd.MS.MS_noMut.nb /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1003_AC15A25/Q20_P3_bc1003_AC15A25.bam.A25.seq.Max1MutEachEnd.MS.MS_Mut.nb  A  /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1003_AC15A25/Q20_P3_bc1003_AC15A25.bam.A25.seq.MS
# =============[ END ]===========
# [Creat: /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1003_AC15A25/Q20_P3_bc1003_AC15A25.bam.A25.seq.MS.all.nb ]
# [Creat: /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1003_AC15A25/Q20_P3_bc1003_AC15A25.bam.A25.seq.MS.all.profil.png ]
# [Creat: /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1003_AC15A25/Q20_P3_bc1003_AC15A25.bam.A25.seq.MS.profil_v2.png ]
#
#nbRead	nbMSall	nb_EndnoMut_MSnoMut	nb_EndnoMut_MSMut	nb_EndMut_MSnoMut	nb_EndMut_MSMut
291618	93510	93120	331	32	27
